J3_7LS1_006

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

7LS1|1|A2|A|1607, 7LS1|1|A2|U|1636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_006 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4627

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.2

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

5

Unit IDs

7LS1|1|A2|U|1528
7LS1|1|A2|U|1529
*
7LS1|1|A2|A|1604
7LS1|1|A2|G|1605
7LS1|1|A2|A|1606
7LS1|1|A2|A|1607
7LS1|1|A2|G|1608
*
7LS1|1|A2|C|1634
7LS1|1|A2|G|1635
7LS1|1|A2|U|1636
7LS1|1|A2|G|1637
7LS1|1|A2|G|1638
7LS1|1|A2|A|1639

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain N2

60S ribosomal protein L21

Chain V2

60S ribosomal protein L29