J3_7LS1_008

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7LS1|1|A2|A|2151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1369

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7LS1|1|A2|C|2148
7LS1|1|A2|G|2149
7LS1|1|A2|A|2150
7LS1|1|A2|A|2151
7LS1|1|A2|G|2152
7LS1|1|A2|U|2153
7LS1|1|A2|G|2154
*
7LS1|1|A2|C|2560
7LS1|1|A2|A|2561
7LS1|1|A2|A|2562
*
7LS1|1|A2|U|2574
7LS1|1|A2|C|2575
7LS1|1|A2|U|2576
7LS1|1|A2|G|2577

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain a2

60S ribosomal protein L34