J3_7LS1_010
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_010 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1633
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7LS1|1|A2|U|2195
7LS1|1|A2|C|2196
7LS1|1|A2|G|2197
7LS1|1|A2|G|2198
7LS1|1|A2|U|2199
7LS1|1|A2|C|2200
*
7LS1|1|A2|G|2270
7LS1|1|A2|G|2271
7LS1|1|A2|A|2272
7LS1|1|A2|G|2273
7LS1|1|A2|U|2274
*
7LS1|1|A2|A|2291
7LS1|1|A2|A|2292
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R2
- 60S ribosomal protein L23a
- Chain a2
- 60S ribosomal protein L34
- Chain e2
- 60S ribosomal protein L38
- Chain f2
- 60S ribosomal protein L39
Coloring options: