J3_7LS1_024
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_024 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.2896
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7LS1|1|m2|U|1227
7LS1|1|m2|G|1228
7LS1|1|m2|G|1229
7LS1|1|m2|A|1230
*
7LS1|1|m2|U|1532
7LS1|1|m2|A|1533
7LS1|1|m2|C|1534
*
7LS1|1|m2|G|1640
7LS1|1|m2|G|1641
7LS1|1|m2|A|1642
7LS1|1|m2|A|1643
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A3
- 40S ribosomal protein S18
- Chain B3
- 40S ribosomal protein S19
- Chain n2
- Transfer RNA; tRNA
- Chain s2
- 40S ribosomal protein S5
- Chain y2
- 40S ribosomal protein S16
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