J3_7LS1_031
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 7LS1|1|A2|G|409, 7LS1|1|A2|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_031 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.3187
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7LS1|1|A2|U|380
7LS1|1|A2|U|381
7LS1|1|A2|G|382
7LS1|1|A2|A|383
7LS1|1|A2|A|384
7LS1|1|A2|A|385
7LS1|1|A2|A|386
7LS1|1|A2|G|387
7LS1|1|A2|A|388
7LS1|1|A2|A|389
7LS1|1|A2|C|390
*
7LS1|1|A2|G|401
7LS1|1|A2|A|402
7LS1|1|A2|G|403
7LS1|1|A2|U|404
7LS1|1|A2|U|405
7LS1|1|A2|C|406
7LS1|1|A2|A|407
7LS1|1|A2|A|408
7LS1|1|A2|G|409
7LS1|1|A2|A|410
7LS1|1|A2|G|411
7LS1|1|A2|G|412
7LS1|1|A2|G|413
7LS1|1|A2|C|414
7LS1|1|A2|G|415
*
7LS1|1|C2|C|19
7LS1|1|C2|A|20
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain F2
- 60S ribosomal protein L4
- Chain J2
- 60S ribosomal protein L17
- Chain S2
- 60S ribosomal protein L26
- Chain f2
- 60S ribosomal protein L39
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