J3_7LS1_035
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 7LS1|1|A2|C|2225, 7LS1|1|A2|A|2227, 7LS1|1|A2|G|2230, 7LS1|1|A2|C|2259
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_035 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5932
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7LS1|1|A2|A|2206
7LS1|1|A2|G|2207
7LS1|1|A2|A|2208
7LS1|1|A2|U|2209
7LS1|1|A2|G|2210
7LS1|1|A2|G|2211
*
7LS1|1|A2|C|2220
7LS1|1|A2|G|2221
7LS1|1|A2|U|2222
7LS1|1|A2|U|2223
7LS1|1|A2|C|2224
7LS1|1|A2|C|2225
7LS1|1|A2|G|2226
7LS1|1|A2|A|2227
7LS1|1|A2|A|2228
7LS1|1|A2|G|2229
7LS1|1|A2|G|2230
7LS1|1|A2|G|2231
*
7LS1|1|A2|C|2256
7LS1|1|A2|G|2257
7LS1|1|A2|G|2258
7LS1|1|A2|C|2259
7LS1|1|A2|C|2260
7LS1|1|A2|G|2261
7LS1|1|A2|A|2262
7LS1|1|A2|PSU|2263
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B1
- 60S ribosomal protein L7a
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D2
- 60S ribosomal protein L8
- Chain H1
- 60S ribosomal protein L15
- Chain R2
- 60S ribosomal protein L23a
- Chain d2
- 60S ribosomal protein L37
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