J3_7LS1_037
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUC
- Length
- 21 nucleotides
- Bulged bases
- 7LS1|1|A2|U|4026
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_037 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1007
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7LS1|1|A2|G|3880
7LS1|1|A2|U|3881
7LS1|1|A2|C|3882
*
7LS1|1|A2|G|3983
7LS1|1|A2|C|3984
7LS1|1|A2|C|3985
7LS1|1|A2|U|3986
7LS1|1|A2|5MC|3987
7LS1|1|A2|A|3988
7LS1|1|A2|C|3989
7LS1|1|A2|G|3990
7LS1|1|A2|A|3991
7LS1|1|A2|U|3992
7LS1|1|A2|C|3993
7LS1|1|A2|C|3994
*
7LS1|1|A2|OMG|4022
7LS1|1|A2|MHG|4023
7LS1|1|A2|U|4024
7LS1|1|A2|G|4025
7LS1|1|A2|U|4026
7LS1|1|A2|C|4027
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain K2
- 60S ribosomal protein L18
- Chain N2
- 60S ribosomal protein L21
- Chain U2
- 60S ribosomal protein L27a
- Chain i2
- 60S ribosomal protein L36a
- Chain n2
- Transfer RNA; tRNA
Coloring options: