J3_7LS1_046
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_046 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1703
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7LS1|1|A2|A|2353
7LS1|1|A2|G|2354
7LS1|1|A2|A|2355
7LS1|1|A2|A|2356
7LS1|1|A2|G|2357
*
7LS1|1|A2|C|2492
7LS1|1|A2|C|2493
*
7LS1|1|A2|G|2497
7LS1|1|A2|A|2498
7LS1|1|A2|A|2499
7LS1|1|A2|A|2500
7LS1|1|A2|A|2501
7LS1|1|A2|U|2502
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- 60S ribosomal protein L8
- Chain a2
- 60S ribosomal protein L34
- Chain j2
- 60S ribosomal protein L37a
Coloring options: