J3_7LS1_047

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7LS1|1|A2|A|4116, 7LS1|1|A2|U|4117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_047 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.1683

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.2

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

5

Unit IDs

7LS1|1|A2|U|4115
7LS1|1|A2|A|4116
7LS1|1|A2|U|4117
7LS1|1|A2|C|4118
*
7LS1|1|A2|G|4143
7LS1|1|A2|U|4144
7LS1|1|A2|U|4145
*
7LS1|1|A2|A|4159
7LS1|1|A2|C|4160
7LS1|1|A2|U|4161
7LS1|1|A2|A|4162
7LS1|1|A2|A|4163
7LS1|1|A2|U|4164
7LS1|1|A2|A|4165

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain I2

60S ribosomal protein L13a

Chain P2

60S ribosomal protein L23