J3_7LS2_021

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAGG*CUGGAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|m2|A|818
7LS2|1|m2|G|819
7LS2|1|m2|A|820
7LS2|1|m2|G|821
*
7LS2|1|m2|C|831
7LS2|1|m2|A|832
7LS2|1|m2|G|833
7LS2|1|m2|G|834
*
7LS2|1|m2|C|845
7LS2|1|m2|U|846
7LS2|1|m2|G|847
7LS2|1|m2|G|848
7LS2|1|m2|A|849
7LS2|1|m2|U|850

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24

Chain r2

40S ribosomal protein S4, X isoform