J3_7LS2_022
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7LS2|1|m2|G|993
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS2_022 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1181
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7LS2|1|m2|A|940
7LS2|1|m2|U|941
7LS2|1|m2|U|942
7LS2|1|m2|C|943
*
7LS2|1|m2|G|987
7LS2|1|m2|G|988
7LS2|1|m2|A|989
7LS2|1|m2|C|990
7LS2|1|m2|C|991
7LS2|1|m2|A|992
7LS2|1|m2|G|993
7LS2|1|m2|A|994
7LS2|1|m2|G|995
*
7LS2|1|m2|C|1002
7LS2|1|m2|A|1003
7LS2|1|m2|U|1004
7LS2|1|m2|U|1005
7LS2|1|m2|U|1006
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain F3
- 40S ribosomal protein S26
- Chain N3
- 40S ribosomal protein S13
- Chain O3
- 40S ribosomal protein S14
- Chain j2
- 60S ribosomal protein L37a
- Chain p2
- 40S ribosomal protein S3a
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