J3_7LS2_034

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUCGGAACGGAACGGGACGGGA*UCGGGCCC*GGAGCCUACG

Length

42 nucleotides

Bulged bases

7LS2|1|A2|G|1891, 7LS2|1|A2|C|1893, 7LS2|1|A2|C|2006, 7LS2|1|A2|G|2007, 7LS2|1|A2|G|2008, 7LS2|1|A2|U|2022, 7LS2|1|A2|C|2024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|C|1889
7LS2|1|A2|A|1890
7LS2|1|A2|G|1891
7LS2|1|A2|U|1892
7LS2|1|A2|C|1893
7LS2|1|A2|G|1894
7LS2|1|A2|G|1895
7LS2|1|A2|A|1896
7LS2|1|A2|A|1897
7LS2|1|A2|C|1898
7LS2|1|A2|G|1899
7LS2|1|A2|G|1900
7LS2|1|A2|A|1901
7LS2|1|A2|A|1902
7LS2|1|A2|C|1903
7LS2|1|A2|G|1904
7LS2|1|A2|G|1905
7LS2|1|A2|G|1906
7LS2|1|A2|A|1907
7LS2|1|A2|C|1908
7LS2|1|A2|G|1909
7LS2|1|A2|G|1910
7LS2|1|A2|G|1911
7LS2|1|A2|A|1912
*
7LS2|1|A2|U|2005
7LS2|1|A2|C|2006
7LS2|1|A2|G|2007
7LS2|1|A2|G|2008
7LS2|1|A2|G|2009
7LS2|1|A2|C|2010
7LS2|1|A2|C|2011
7LS2|1|A2|C|2012
*
7LS2|1|A2|G|2016
7LS2|1|A2|G|2017
7LS2|1|A2|A|2018
7LS2|1|A2|G|2019
7LS2|1|A2|C|2020
7LS2|1|A2|C|2021
7LS2|1|A2|U|2022
7LS2|1|A2|A|2023
7LS2|1|A2|C|2024
7LS2|1|A2|G|2025

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain F2

60S ribosomal protein L4

Chain H2

60S ribosomal protein L6

Chain K2

60S ribosomal protein L18

Chain V2

60S ribosomal protein L29

Chain k2

60S ribosomal protein L28