J3_7LS2_045
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAU(PSU)UG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 7LS2|1|m2|G|1258, 7LS2|1|m2|A|1260, 7LS2|1|m2|A|1262
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LS2|1|m2|C|1239
7LS2|1|m2|U|1240
7LS2|1|m2|U|1241
7LS2|1|m2|A|1242
7LS2|1|m2|A|1243
7LS2|1|m2|U|1244
7LS2|1|m2|PSU|1245
7LS2|1|m2|U|1246
7LS2|1|m2|G|1247
*
7LS2|1|m2|C|1256
7LS2|1|m2|G|1257
7LS2|1|m2|G|1258
7LS2|1|m2|G|1259
7LS2|1|m2|A|1260
7LS2|1|m2|A|1261
7LS2|1|m2|A|1262
7LS2|1|m2|C|1263
7LS2|1|m2|C|1264
7LS2|1|m2|U|1265
7LS2|1|m2|C|1266
7LS2|1|m2|A|1267
7LS2|1|m2|C|1268
*
7LS2|1|m2|G|1518
7LS2|1|m2|G|1519
7LS2|1|m2|C|1520
7LS2|1|m2|U|1521
7LS2|1|m2|G|1522
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain A3
- 40S ribosomal protein S18
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain x2
- 40S ribosomal protein S15
- Chain y2
- 40S ribosomal protein S16
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