3D structure

PDB id
7LVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified 50S subunit from Escherichia coli
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
7LVK|1|I|A|504, 7LVK|1|I|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7LVK_014 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1159
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7LVK|1|I|G|30
7LVK|1|I|C|31
*
7LVK|1|I|G|474
7LVK|1|I|C|475
7LVK|1|I|G|476
7LVK|1|I|A|477
7LVK|1|I|A|478
7LVK|1|I|A|479
7LVK|1|I|A|480
7LVK|1|I|G|481
7LVK|1|I|A|482
7LVK|1|I|A|483
7LVK|1|I|C|484
*
7LVK|1|I|G|496
7LVK|1|I|A|497
7LVK|1|I|G|498
7LVK|1|I|U|499
7LVK|1|I|G|500
7LVK|1|I|A|501
7LVK|1|I|A|502
7LVK|1|I|A|503
7LVK|1|I|A|504
7LVK|1|I|A|505
7LVK|1|I|G|506
7LVK|1|I|A|507
7LVK|1|I|A|508
7LVK|1|I|C|509
7LVK|1|I|C|510

Current chains

Chain I
23S rRNA

Nearby chains

Chain Y
50S ribosomal protein L20
Chain a
50S ribosomal protein L22
Chain c
50S ribosomal protein L24

Coloring options:


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