J3_7M4V_014
3D structure
- PDB id
- 7M4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-Eravacycline complex: 50S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAUAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 7M4V|1|A|U|503, 7M4V|1|A|U|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7M4V_014 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.236
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
7M4V|1|A|G|37
7M4V|1|A|C|38
*
7M4V|1|A|G|473
7M4V|1|A|C|474
7M4V|1|A|G|475
7M4V|1|A|A|476
7M4V|1|A|A|477
7M4V|1|A|A|478
7M4V|1|A|A|479
7M4V|1|A|G|480
7M4V|1|A|A|481
7M4V|1|A|A|482
7M4V|1|A|C|483
*
7M4V|1|A|G|495
7M4V|1|A|A|496
7M4V|1|A|G|497
7M4V|1|A|U|498
7M4V|1|A|G|499
7M4V|1|A|A|500
7M4V|1|A|A|501
7M4V|1|A|A|502
7M4V|1|A|U|503
7M4V|1|A|A|504
7M4V|1|A|G|505
7M4V|1|A|A|506
7M4V|1|A|U|507
7M4V|1|A|C|508
7M4V|1|A|C|509
Current chains
- Chain A
- 23s ribosomal RNA
Nearby chains
- Chain P
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L22
- Chain T
- 50S ribosomal protein L24
Coloring options: