J3_7M4W_034

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4W_034 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0691

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7M4W|1|a|C|933
7M4W|1|a|A|934
7M4W|1|a|A|935
7M4W|1|a|G|936
*
7M4W|1|a|C|1341
7M4W|1|a|U|1342
7M4W|1|a|A|1343
7M4W|1|a|G|1344
7M4W|1|a|U|1345
7M4W|1|a|A|1346
7M4W|1|a|A|1347
*
7M4W|1|a|U|1369
7M4W|1|a|G|1370
7M4W|1|a|A|1371
7M4W|1|a|A|1372
7M4W|1|a|U|1373
7M4W|1|a|A|1374
7M4W|1|a|C|1375
7M4W|1|a|G|1376

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9