J3_7M4W_037

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

7M4W|1|a|A|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4W_037 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.2103

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7M4W|1|a|U|1070
7M4W|1|a|G|1071
*
7M4W|1|a|U|1080
7M4W|1|a|G|1081
7M4W|1|a|U|1082
7M4W|1|a|U|1083
*
7M4W|1|a|G|1096
7M4W|1|a|C|1097
7M4W|1|a|A|1098
7M4W|1|a|A|1099

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5