J3_7M4Y_019
3D structure
- PDB id
- 7M4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7M4Y|1|a|A|972, 7M4Y|1|a|G|973, 7M4Y|1|a|A|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7M4Y_019 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0821
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7M4Y|1|a|U|952
7M4Y|1|a|U|953
7M4Y|1|a|U|954
7M4Y|1|a|A|955
7M4Y|1|a|A|956
7M4Y|1|a|U|957
7M4Y|1|a|U|958
7M4Y|1|a|C|959
*
7M4Y|1|a|G|970
7M4Y|1|a|A|971
7M4Y|1|a|A|972
7M4Y|1|a|G|973
7M4Y|1|a|A|974
7M4Y|1|a|A|975
7M4Y|1|a|C|976
7M4Y|1|a|C|977
7M4Y|1|a|U|978
7M4Y|1|a|U|979
7M4Y|1|a|A|980
7M4Y|1|a|C|981
*
7M4Y|1|a|G|1218
7M4Y|1|a|G|1219
7M4Y|1|a|C|1220
7M4Y|1|a|U|1221
7M4Y|1|a|A|1222
Current chains
- Chain a
- 16s Ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
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