J3_7M4Z_006

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CAAG*CCGAAAC*GUG

Length

14 nucleotides

Bulged bases

7M4Z|1|A|G|1605, 7M4Z|1|A|A|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_006 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.3457

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7M4Z|1|A|C|1301
7M4Z|1|A|A|1302
7M4Z|1|A|A|1303
7M4Z|1|A|G|1304
*
7M4Z|1|A|C|1603
7M4Z|1|A|C|1604
7M4Z|1|A|G|1605
7M4Z|1|A|A|1606
7M4Z|1|A|A|1607
7M4Z|1|A|A|1608
7M4Z|1|A|C|1609
*
7M4Z|1|A|G|1618
7M4Z|1|A|U|1619
7M4Z|1|A|G|1620

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34