J3_7M4Z_010

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7M4Z|1|A|A|2514, 7M4Z|1|A|U|2515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0961

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7M4Z|1|A|C|2513
7M4Z|1|A|A|2514
7M4Z|1|A|U|2515
7M4Z|1|A|C|2516
*
7M4Z|1|A|G|2541
7M4Z|1|A|U|2542
7M4Z|1|A|A|2543
*
7M4Z|1|A|U|2557
7M4Z|1|A|U|2558
7M4Z|1|A|U|2559
7M4Z|1|A|A|2560
7M4Z|1|A|A|2561
7M4Z|1|A|A|2562
7M4Z|1|A|G|2563

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14