J3_7M4Z_013

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

ACCAUAG*CG*UCAU

Length

13 nucleotides

Bulged bases

7M4Z|1|B|U|12, 7M4Z|1|B|C|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_013 not in the Motif Atlas

Geometric match to J3_7A0S_021

Geometric discrepancy: 0.3497

The information below is about J3_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47324.1

Basepair signature

cWW-F-F-tSS-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7M4Z|1|B|A|8
7M4Z|1|B|C|9
7M4Z|1|B|C|10
7M4Z|1|B|A|11
7M4Z|1|B|U|12
7M4Z|1|B|A|13
7M4Z|1|B|G|14
*
7M4Z|1|B|C|66
7M4Z|1|B|G|67
*
7M4Z|1|B|U|104
7M4Z|1|B|C|105
7M4Z|1|B|A|106
7M4Z|1|B|U|107

Current chains

Chain B

5s ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L18

Chain V

50S ribosomal protein L27