J3_7M5D_003

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7M5D|1|1|U|686, 7M5D|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.3609

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7M5D|1|1|U|683
7M5D|1|1|G|684
7M5D|1|1|A|685
7M5D|1|1|U|686
7M5D|1|1|C|687
7M5D|1|1|U|688
7M5D|1|1|A|689
*
7M5D|1|1|U|773
7M5D|1|1|G|774
7M5D|1|1|G|775
*
7M5D|1|1|C|791
7M5D|1|1|A|792
7M5D|1|1|A|793
7M5D|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34