3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7M5D_009 not in the Motif Atlas
Homologous match to J3_8VTW_006
Geometric discrepancy: 0.1264
The information below is about J3_8VTW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.4
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

7M5D|1|1|C|2091
7M5D|1|1|U|2092
7M5D|1|1|G|2093
*
7M5D|1|1|C|2196
7M5D|1|1|U|2197
7M5D|1|1|A|2198
7M5D|1|1|A|2199
7M5D|1|1|C|2200
*
7M5D|1|1|G|2223
7M5D|1|1|G|2224
7M5D|1|1|A|2225
7M5D|1|1|C|2226
7M5D|1|1|A|2227
7M5D|1|1|G|2228

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain G
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

Coloring options:


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