J3_7M5D_018

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0948

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7M5D|1|2|C|936
7M5D|1|2|A|937
7M5D|1|2|A|938
7M5D|1|2|G|939
*
7M5D|1|2|C|1344
7M5D|1|2|U|1345
7M5D|1|2|A|1346
7M5D|1|2|G|1347
7M5D|1|2|U|1348
7M5D|1|2|A|1349
7M5D|1|2|A|1350
*
7M5D|1|2|U|1372
7M5D|1|2|G|1373
7M5D|1|2|A|1374
7M5D|1|2|A|1375
7M5D|1|2|U|1376
7M5D|1|2|A|1377
7M5D|1|2|C|1378
7M5D|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9