3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7M5D_022 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1101
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

7M5D|1|2|C|1063
7M5D|1|2|G|1064
7M5D|1|2|U|1065
7M5D|1|2|C|1066
7M5D|1|2|A|1067
7M5D|1|2|G|1068
*
7M5D|1|2|C|1107
7M5D|1|2|G|1108
7M5D|1|2|C|1109
7M5D|1|2|A|1110
7M5D|1|2|A|1111
7M5D|1|2|C|1112
7M5D|1|2|C|1113
*
7M5D|1|2|G|1187
7M5D|1|2|A|1188
7M5D|1|2|U|1189
7M5D|1|2|G|1190
7M5D|1|2|A|1191
7M5D|1|2|C|1192
7M5D|1|2|G|1193

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S2
Chain h
30S ribosomal protein S3
Chain j
30S ribosomal protein S5
Chain n
30S ribosomal protein S9
Chain o
30S ribosomal protein S10
Chain s
30S ribosomal protein S14

Coloring options:


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