J3_7M5D_035

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_035 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1117

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7M5D|1|2|U|1073
7M5D|1|2|G|1074
*
7M5D|1|2|U|1083
7M5D|1|2|G|1084
7M5D|1|2|U|1085
7M5D|1|2|U|1086
*
7M5D|1|2|G|1099
7M5D|1|2|C|1100
7M5D|1|2|A|1101
7M5D|1|2|A|1102

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain j

30S ribosomal protein S5

Chain z

30S ribosomal protein S21