J3_7MD7_034

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_034 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0549

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7MD7|1|2A|C|1298
7MD7|1|2A|G|1299
7MD7|1|2A|U|1300
7MD7|1|2A|A|1301
7MD7|1|2A|A|1302
7MD7|1|2A|G|1303
*
7MD7|1|2A|C|1625
7MD7|1|2A|G|1626
7MD7|1|2A|G|1627
*
7MD7|1|2A|U|1639
7MD7|1|2A|C|1640
7MD7|1|2A|A|1641
7MD7|1|2A|G|1642

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains