J3_7MD7_036

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

7MD7|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_036 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0653

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7MD7|1|2A|G|1344
7MD7|1|2A|C|1345
7MD7|1|2A|G|1346
7MD7|1|2A|G|1347
7MD7|1|2A|G|1348
7MD7|1|2A|A|1349
7MD7|1|2A|C|1350
*
7MD7|1|2A|G|1381
7MD7|1|2A|G|1382
7MD7|1|2A|C|1383
7MD7|1|2A|A|1384
7MD7|1|2A|G|1385
*
7MD7|1|2A|C|1402
7MD7|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23