J3_7MD7_057

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

7MD7|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_057 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0529

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7MD7|1|1A|C|297
7MD7|1|1A|G|298
7MD7|1|1A|A|299
7MD7|1|1A|A|300
7MD7|1|1A|G|301
*
7MD7|1|1A|C|316
7MD7|1|1A|G|317
7MD7|1|1A|C|318
7MD7|1|1A|C|319
7MD7|1|1A|A|320
7MD7|1|1A|G|321
7MD7|1|1A|A|322
7MD7|1|1A|G|323
7MD7|1|1A|A|324
7MD7|1|1A|G|325
*
7MD7|1|1A|C|337
7MD7|1|1A|G|338
7MD7|1|1A|U|339
7MD7|1|1A|A|340
7MD7|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24