J3_7MD7_059

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_059 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0714

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7MD7|1|1A|G|1424
7MD7|1|1A|G|1425
7MD7|1|1A|G|1426
7MD7|1|1A|A|1427
7MD7|1|1A|C|1428
7MD7|1|1A|G|1429
*
7MD7|1|1A|C|1564
7MD7|1|1A|C|1565
*
7MD7|1|1A|G|1568
7MD7|1|1A|A|1569
7MD7|1|1A|A|1570
7MD7|1|1A|A|1571
7MD7|1|1A|A|1572
7MD7|1|1A|G|1573
7MD7|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2