J3_7MDZ_028

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MDZ_028 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0968

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7MDZ|1|9|U|1350
7MDZ|1|9|G|1351
*
7MDZ|1|9|U|1360
7MDZ|1|9|G|1361
7MDZ|1|9|U|1362
7MDZ|1|9|C|1363
*
7MDZ|1|9|G|1375
7MDZ|1|9|A|1376
7MDZ|1|9|U|1377
7MDZ|1|9|A|1378
7MDZ|1|9|A|1379

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain CC

uS5

Chain RR

eS17