3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUC*GCCUCACGAUCC*GGUGUC
Length
21 nucleotides
Bulged bases
7MDZ|1|5|U|4374
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MDZ_038 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.0782
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

7MDZ|1|5|G|4228
7MDZ|1|5|U|4229
7MDZ|1|5|C|4230
*
7MDZ|1|5|G|4331
7MDZ|1|5|C|4332
7MDZ|1|5|C|4333
7MDZ|1|5|U|4334
7MDZ|1|5|C|4335
7MDZ|1|5|A|4336
7MDZ|1|5|C|4337
7MDZ|1|5|G|4338
7MDZ|1|5|A|4339
7MDZ|1|5|U|4340
7MDZ|1|5|C|4341
7MDZ|1|5|C|4342
*
7MDZ|1|5|G|4370
7MDZ|1|5|G|4371
7MDZ|1|5|U|4372
7MDZ|1|5|G|4373
7MDZ|1|5|U|4374
7MDZ|1|5|C|4375

Current chains

Chain 5
28S rRNA

Nearby chains

Chain Q
Ribosomal protein L18
Chain T
eL21
Chain a
60S ribosomal protein L27a
Chain o
eL42

Coloring options:


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