J3_7MDZ_041

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7MDZ|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MDZ_041 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0865

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7MDZ|1|9|A|40
7MDZ|1|9|G|41
7MDZ|1|9|A|42
7MDZ|1|9|U|43
7MDZ|1|9|U|44
7MDZ|1|9|A|45
7MDZ|1|9|A|46
7MDZ|1|9|G|47
*
7MDZ|1|9|C|479
7MDZ|1|9|G|480
7MDZ|1|9|C|481
7MDZ|1|9|G|482
7MDZ|1|9|C|483
7MDZ|1|9|A|484
7MDZ|1|9|A|485
7MDZ|1|9|A|486
7MDZ|1|9|U|487
*
7MDZ|1|9|A|512
7MDZ|1|9|G|513
7MDZ|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12