J3_7MPI_024
3D structure
- PDB id
- 7MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 7MPI|1|B5|G|1199, 7MPI|1|B5|G|1201, 7MPI|1|B5|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPI_024 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0608
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7MPI|1|B5|C|1180
7MPI|1|B5|U|1181
7MPI|1|B5|U|1182
7MPI|1|B5|A|1183
7MPI|1|B5|A|1184
7MPI|1|B5|U|1185
7MPI|1|B5|U|1186
7MPI|1|B5|U|1187
*
7MPI|1|B5|G|1198
7MPI|1|B5|G|1199
7MPI|1|B5|G|1200
7MPI|1|B5|G|1201
7MPI|1|B5|A|1202
7MPI|1|B5|A|1203
7MPI|1|B5|A|1204
7MPI|1|B5|C|1205
7MPI|1|B5|U|1206
7MPI|1|B5|C|1207
7MPI|1|B5|A|1208
7MPI|1|B5|C|1209
*
7MPI|1|B5|G|1454
7MPI|1|B5|G|1455
7MPI|1|B5|C|1456
7MPI|1|B5|C|1457
7MPI|1|B5|G|1458
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- 40S ribosomal protein S15
- Chain BS
- 40S ribosomal protein S18-A
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bh
- Suppressor protein STM1
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