J3_7MPI_035

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGACGGUGGCC*GGAAUAGG*CACC

Length

23 nucleotides

Bulged bases

7MPI|1|A1|C|1232, 7MPI|1|A1|G|1234, 7MPI|1|A1|U|1235, 7MPI|1|A1|G|1236, 7MPI|1|A1|G|1237, 7MPI|1|A1|C|1238, 7MPI|1|A1|A|1251, 7MPI|1|A1|A|1252, 7MPI|1|A1|U|1253, 7MPI|1|A1|A|1260, 7MPI|1|A1|G|1261, 7MPI|1|A1|A|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|A1|G|1229
7MPI|1|A1|G|1230
7MPI|1|A1|A|1231
7MPI|1|A1|C|1232
7MPI|1|A1|G|1233
7MPI|1|A1|G|1234
7MPI|1|A1|U|1235
7MPI|1|A1|G|1236
7MPI|1|A1|G|1237
7MPI|1|A1|C|1238
7MPI|1|A1|C|1239
*
7MPI|1|A1|G|1249
7MPI|1|A1|G|1250
7MPI|1|A1|A|1251
7MPI|1|A1|A|1252
7MPI|1|A1|U|1253
7MPI|1|A1|A|1260
7MPI|1|A1|G|1261
7MPI|1|A1|G|1262
*
7MPI|1|A1|C|1277
7MPI|1|A1|A|1278
7MPI|1|A1|C|1279
7MPI|1|A1|C|1280

Current chains

Chain A1

25S rRNA

Nearby chains