J3_7MPI_043

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7MPI|1|B5|U|227, 7MPI|1|B5|U|238, 7MPI|1|B5|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|B5|A|213
7MPI|1|B5|G|214
7MPI|1|B5|A|215
7MPI|1|B5|U|216
7MPI|1|B5|A|217
7MPI|1|B5|A|218
7MPI|1|B5|A|219
7MPI|1|B5|A|220
7MPI|1|B5|A|221
7MPI|1|B5|A|222
7MPI|1|B5|U|223
7MPI|1|B5|C|224
7MPI|1|B5|A|225
7MPI|1|B5|A|226
7MPI|1|B5|U|227
7MPI|1|B5|G|228
*
7MPI|1|B5|C|237
7MPI|1|B5|U|238
7MPI|1|B5|C|239
7MPI|1|B5|U|240
7MPI|1|B5|U|241
7MPI|1|B5|U|242
7MPI|1|B5|G|243
*
7MPI|1|B5|C|250
7MPI|1|B5|A|251
7MPI|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A