3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CAU*AGAUG*CUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_014 not in the Motif Atlas
Homologous match to J3_8P9A_065
Geometric discrepancy: 0.1222
The information below is about J3_8P9A_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_81015.1
Basepair signature
cWW-cWW-F-cWW-F-cWW-F
Number of instances in this motif group
1

Unit IDs

7MPJ|1|A1|C|3298
7MPJ|1|A1|A|3299
7MPJ|1|A1|U|3300
*
7MPJ|1|A1|A|3314
7MPJ|1|A1|G|3315
7MPJ|1|A1|A|3316
7MPJ|1|A1|U|3317
7MPJ|1|A1|G|3318
*
7MPJ|1|A1|C|3388
7MPJ|1|A1|U|3389
7MPJ|1|A1|G|3390

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AP
60S ribosomal protein L17-A
Chain Ad
60S ribosomal protein L31-A

Coloring options:


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