Motif J3_40896.1 Version J3_40896.1 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 1-11 | 2-5 | 2-10 | 3-4 | 8-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_065 | 8P9A | 0.0000 | 0 | AR | LSU rRNA | C | 3298 | A | 3299 | U | 3300 | * | A | 3314 | G | 3315 | A | 3316 | U | 3317 | G | 3318 | * | C | 3388 | U | 3389 | G | 3390 | cWW | cWW | cWW | cWW | |
| 2 | J3_9H3G_026 | 9H3G | 0.9918 | 1 | A | LSU rRNA | C | 3285 | C | 3286 | U | 3287 | * | A | 3301 | A | 3302 | A | 3303 | U | 3304 | A | 3305 | * | U | 3376 | A | 3378 | G | 3379 | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAU*AGAUG*CUG | 1 |
| CCU*AAAUA*UAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAU*U | 1 |
| C*AAU*AA | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-cWW-cWW-F-F-F
- Heat map statistics
- Min 0.99 | Avg 0.50 | Max 0.99
Coloring options: