J3_7MPJ_025

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

7MPJ|1|B5|A|1321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MPJ_025 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0513

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7MPJ|1|B5|U|1293
7MPJ|1|B5|G|1294
*
7MPJ|1|B5|U|1303
7MPJ|1|B5|G|1304
7MPJ|1|B5|U|1305
7MPJ|1|B5|C|1306
*
7MPJ|1|B5|G|1318
7MPJ|1|B5|A|1319
7MPJ|1|B5|U|1320
7MPJ|1|B5|A|1321
7MPJ|1|B5|A|1322

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BC

40S ribosomal protein S2

Chain BR

40S ribosomal protein S17-A