J3_7MPJ_031
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7MPJ|1|A1|A|398, 7MPJ|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_031 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0854
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7MPJ|1|A1|A|369
7MPJ|1|A1|U|370
7MPJ|1|A1|G|371
7MPJ|1|A1|A|372
7MPJ|1|A1|A|373
7MPJ|1|A1|A|374
7MPJ|1|A1|A|375
7MPJ|1|A1|G|376
7MPJ|1|A1|A|377
7MPJ|1|A1|A|378
7MPJ|1|A1|C|379
*
7MPJ|1|A1|G|390
7MPJ|1|A1|A|391
7MPJ|1|A1|G|392
7MPJ|1|A1|U|393
7MPJ|1|A1|G|394
7MPJ|1|A1|A|395
7MPJ|1|A1|A|396
7MPJ|1|A1|A|397
7MPJ|1|A1|A|398
7MPJ|1|A1|A|399
7MPJ|1|A1|G|400
7MPJ|1|A1|U|401
7MPJ|1|A1|A|402
7MPJ|1|A1|C|403
7MPJ|1|A1|G|404
*
7MPJ|1|A4|C|19
7MPJ|1|A4|U|20
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
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