3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
7MPJ|1|A1|A|398, 7MPJ|1|A1|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_031 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.0854
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

7MPJ|1|A1|A|369
7MPJ|1|A1|U|370
7MPJ|1|A1|G|371
7MPJ|1|A1|A|372
7MPJ|1|A1|A|373
7MPJ|1|A1|A|374
7MPJ|1|A1|A|375
7MPJ|1|A1|G|376
7MPJ|1|A1|A|377
7MPJ|1|A1|A|378
7MPJ|1|A1|C|379
*
7MPJ|1|A1|G|390
7MPJ|1|A1|A|391
7MPJ|1|A1|G|392
7MPJ|1|A1|U|393
7MPJ|1|A1|G|394
7MPJ|1|A1|A|395
7MPJ|1|A1|A|396
7MPJ|1|A1|A|397
7MPJ|1|A1|A|398
7MPJ|1|A1|A|399
7MPJ|1|A1|G|400
7MPJ|1|A1|U|401
7MPJ|1|A1|A|402
7MPJ|1|A1|C|403
7MPJ|1|A1|G|404
*
7MPJ|1|A4|C|19
7MPJ|1|A4|U|20

Current chains

Chain A1
25S rRNA
Chain A4
5.8S rRNA

Nearby chains

Chain AC
60S ribosomal protein L4-A
Chain AP
60S ribosomal protein L17-A
Chain AY
60S ribosomal protein L26-A
Chain Al
60S ribosomal protein L39

Coloring options:


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