J3_7MPJ_032
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAG*CGUA(OMG)*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_032 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.0755
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7MPJ|1|A1|U|829
7MPJ|1|A1|A|830
7MPJ|1|A1|G|831
*
7MPJ|1|A1|C|863
7MPJ|1|A1|G|864
7MPJ|1|A1|U|865
7MPJ|1|A1|A|866
7MPJ|1|A1|OMG|867
*
7MPJ|1|A1|U|892
7MPJ|1|A1|C|893
7MPJ|1|A1|G|894
7MPJ|1|A1|A|895
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AR
- 60S ribosomal protein L19-A
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
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