3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
(PSU)U*AGAAG*CAUUUGA
Length
14 nucleotides
Bulged bases
7MPJ|1|A1|A|1065, 7MPJ|1|A1|U|1095
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_033 not in the Motif Atlas
Homologous match to J3_8C3A_051
Geometric discrepancy: 0.259
The information below is about J3_8C3A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11066.3
Basepair signature
cWW-cSS-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7MPJ|1|A1|PSU|986
7MPJ|1|A1|U|987
*
7MPJ|1|A1|A|1062
7MPJ|1|A1|G|1063
7MPJ|1|A1|A|1064
7MPJ|1|A1|A|1065
7MPJ|1|A1|G|1066
*
7MPJ|1|A1|C|1092
7MPJ|1|A1|A|1093
7MPJ|1|A1|U|1094
7MPJ|1|A1|U|1095
7MPJ|1|A1|U|1096
7MPJ|1|A1|G|1097
7MPJ|1|A1|A|1098

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AF
60S ribosomal protein L7-A
Chain AT
60S ribosomal protein L21-A
Chain Ab
60S ribosomal protein L29

Coloring options:


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