J3_7MPJ_033
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (PSU)U*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 7MPJ|1|A1|A|1065, 7MPJ|1|A1|U|1095
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_033 not in the Motif Atlas
- Homologous match to J3_8C3A_051
- Geometric discrepancy: 0.259
- The information below is about J3_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A1|PSU|986
7MPJ|1|A1|U|987
*
7MPJ|1|A1|A|1062
7MPJ|1|A1|G|1063
7MPJ|1|A1|A|1064
7MPJ|1|A1|A|1065
7MPJ|1|A1|G|1066
*
7MPJ|1|A1|C|1092
7MPJ|1|A1|A|1093
7MPJ|1|A1|U|1094
7MPJ|1|A1|U|1095
7MPJ|1|A1|U|1096
7MPJ|1|A1|G|1097
7MPJ|1|A1|A|1098
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L7-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- 60S ribosomal protein L29
Coloring options: