J3_8C3A_051

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UU*AGAAG*CAAUUGA

Length

14 nucleotides

Bulged bases

8C3A|1|1|A|1061, 8C3A|1|1|U|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.3

Basepair signature

cWW-cSS-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|U|982
8C3A|1|1|U|983
*
8C3A|1|1|A|1058
8C3A|1|1|G|1059
8C3A|1|1|A|1060
8C3A|1|1|A|1061
8C3A|1|1|G|1062
*
8C3A|1|1|C|1088
8C3A|1|1|A|1089
8C3A|1|1|A|1090
8C3A|1|1|U|1091
8C3A|1|1|U|1092
8C3A|1|1|G|1093
8C3A|1|1|A|1094

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AC

60S ribosomal protein L29

Chain o

60S ribosomal protein L7-A