3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*(OMG)GUGCC
Length
21 nucleotides
Bulged bases
7MPJ|1|A1|C|2760, 7MPJ|1|A1|C|2797
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_038 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.0534
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

7MPJ|1|A1|G|2651
7MPJ|1|A1|U|2652
7MPJ|1|A1|C|2653
*
7MPJ|1|A1|G|2754
7MPJ|1|A1|C|2755
7MPJ|1|A1|C|2756
7MPJ|1|A1|U|2757
7MPJ|1|A1|A|2758
7MPJ|1|A1|U|2759
7MPJ|1|A1|C|2760
7MPJ|1|A1|G|2761
7MPJ|1|A1|A|2762
7MPJ|1|A1|U|2763
7MPJ|1|A1|C|2764
7MPJ|1|A1|C|2765
*
7MPJ|1|A1|OMG|2793
7MPJ|1|A1|G|2794
7MPJ|1|A1|U|2795
7MPJ|1|A1|G|2796
7MPJ|1|A1|C|2797
7MPJ|1|A1|C|2798

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AQ
60S ribosomal protein L18-A
Chain AT
60S ribosomal protein L21-A
Chain Aa
60S ribosomal protein L28
Chain Ao
60S ribosomal protein L42-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1454 s