3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AAC*GGACUA*UGGAAGUU(PSU)
Length
18 nucleotides
Bulged bases
7MPJ|1|B5|U|1390, 7MPJ|1|B5|U|1413, 7MPJ|1|B5|U|1414
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_047 not in the Motif Atlas
Homologous match to J3_8C3A_086
Geometric discrepancy: 0.1637
The information below is about J3_8C3A_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_80847.1
Basepair signature
cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

7MPJ|1|B5|A|1336
7MPJ|1|B5|A|1337
7MPJ|1|B5|C|1338
*
7MPJ|1|B5|G|1386
7MPJ|1|B5|G|1387
7MPJ|1|B5|A|1388
7MPJ|1|B5|C|1389
7MPJ|1|B5|U|1390
7MPJ|1|B5|A|1391
*
7MPJ|1|B5|U|1407
7MPJ|1|B5|G|1408
7MPJ|1|B5|G|1409
7MPJ|1|B5|A|1410
7MPJ|1|B5|A|1411
7MPJ|1|B5|G|1412
7MPJ|1|B5|U|1413
7MPJ|1|B5|U|1414
7MPJ|1|B5|PSU|1415

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BF
40S ribosomal protein S5
Chain BQ
40S ribosomal protein S16-A
Chain BR
40S ribosomal protein S17-A
Chain BU
40S ribosomal protein S20
Chain Bd
40S ribosomal protein S29-A
Chain Bg
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


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