J3_7MPJ_047
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 7MPJ|1|B5|U|1390, 7MPJ|1|B5|U|1413, 7MPJ|1|B5|U|1414
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_047 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1637
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|B5|A|1336
7MPJ|1|B5|A|1337
7MPJ|1|B5|C|1338
*
7MPJ|1|B5|G|1386
7MPJ|1|B5|G|1387
7MPJ|1|B5|A|1388
7MPJ|1|B5|C|1389
7MPJ|1|B5|U|1390
7MPJ|1|B5|A|1391
*
7MPJ|1|B5|U|1407
7MPJ|1|B5|G|1408
7MPJ|1|B5|G|1409
7MPJ|1|B5|A|1410
7MPJ|1|B5|A|1411
7MPJ|1|B5|G|1412
7MPJ|1|B5|U|1413
7MPJ|1|B5|U|1414
7MPJ|1|B5|PSU|1415
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- 40S ribosomal protein S5
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bg
- Guanine nucleotide-binding protein subunit beta-like protein
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