J3_7MQ8_004

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCG*CGAGAC*GCAAUA

Length

15 nucleotides

Bulged bases

7MQ8|1|L1|A|1484

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQ8|1|L1|U|1340
7MQ8|1|L1|C|1341
7MQ8|1|L1|G|1345
*
7MQ8|1|L1|C|1384
7MQ8|1|L1|G|1385
7MQ8|1|L1|A|1386
7MQ8|1|L1|G|1387
7MQ8|1|L1|A|1388
7MQ8|1|L1|C|1389
*
7MQ8|1|L1|G|1481
7MQ8|1|L1|C|1482
7MQ8|1|L1|A|1483
7MQ8|1|L1|A|1484
7MQ8|1|L1|U|1485
7MQ8|1|L1|A|1486

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NR

RRP12-like protein

Chain NU

40S ribosomal protein S17