J3_7MQ9_002
3D structure
- PDB id
- 7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1*
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.87 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7MQ9|1|L1|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MQ9_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1407
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7MQ9|1|L1|A|938
7MQ9|1|L1|U|939
7MQ9|1|L1|U|940
7MQ9|1|L1|C|941
*
7MQ9|1|L1|G|985
7MQ9|1|L1|G|986
7MQ9|1|L1|A|987
7MQ9|1|L1|C|988
7MQ9|1|L1|C|989
7MQ9|1|L1|A|990
7MQ9|1|L1|G|991
7MQ9|1|L1|A|992
7MQ9|1|L1|G|993
*
7MQ9|1|L1|C|1000
7MQ9|1|L1|A|1001
7MQ9|1|L1|U|1002
7MQ9|1|L1|U|1003
7MQ9|1|L1|U|1004
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain NE
- Uncharacterized protein C1orf131
- Chain NG
- 40S ribosomal protein S14
- Chain NM
- 40S ribosomal protein S3a
- Chain NY
- KRR1 small subunit processome component homolog
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