J3_7MQ9_006

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7MQ9|1|L1|U|1477

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQ9|1|L1|C|1391
7MQ9|1|L1|U|1392
7MQ9|1|L1|G|1393
7MQ9|1|L1|G|1394
7MQ9|1|L1|C|1395
*
7MQ9|1|L1|G|1450
7MQ9|1|L1|G|1451
7MQ9|1|L1|A|1452
7MQ9|1|L1|C|1453
7MQ9|1|L1|A|1454
7MQ9|1|L1|A|1455
7MQ9|1|L1|G|1456
*
7MQ9|1|L1|C|1470
7MQ9|1|L1|C|1471
7MQ9|1|L1|C|1472
7MQ9|1|L1|G|1473
7MQ9|1|L1|A|1474
7MQ9|1|L1|G|1475
7MQ9|1|L1|A|1476
7MQ9|1|L1|U|1477
7MQ9|1|L1|U|1478
7MQ9|1|L1|G|1479

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NR

RRP12-like protein

Chain NU

40S ribosomal protein S17