J3_7MQ9_008

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

CUCCCG*CG*CCUCUG

Length

14 nucleotides

Bulged bases

7MQ9|1|L0|U|666, 7MQ9|1|L0|C|667

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQ9|1|L0|C|454
7MQ9|1|L0|U|455
7MQ9|1|L0|C|456
7MQ9|1|L0|C|457
7MQ9|1|L0|C|458
7MQ9|1|L0|G|459
*
7MQ9|1|L0|C|609
7MQ9|1|L0|G|610
*
7MQ9|1|L0|C|664
7MQ9|1|L0|C|665
7MQ9|1|L0|U|666
7MQ9|1|L0|C|667
7MQ9|1|L0|U|668
7MQ9|1|L0|G|669

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LJ

U3 small nucleolar RNA-associated protein 15 homolog

Chain LN

U3 small nucleolar RNA-associated protein 4 homolog

Chain ND

Nucleolar protein 7