J3_7MSM_004

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

7MSM|1|A|U|815, 7MSM|1|A|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MSM_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0996

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7MSM|1|A|U|812
7MSM|1|A|G|813
7MSM|1|A|A|814
7MSM|1|A|U|815
7MSM|1|A|C|816
7MSM|1|A|U|817
7MSM|1|A|A|818
*
7MSM|1|A|U|902
7MSM|1|A|A|903
7MSM|1|A|G|904
*
7MSM|1|A|C|920
7MSM|1|A|A|921
7MSM|1|A|A|922
7MSM|1|A|A|923

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2